Round 6
| Overall Selection | Team | Player | Position | College |
| 185 | Tampa Bay | Emeel Salem | CF | Alabama |
Round 7
| Overall Selection | Team | Player | Position | College |
| 231 | Houston | David Dixon | 2B | Auburn |
Round 9
| Overall Selection | Team | Player | Position | College |
| 301 | Detroit | Justin Henry | 2B/LF | Ole Miss |
Round 11
| Overall Selection | Team | Player | Position | College |
| 346 | Florida | Brett Burand | RHP | Delta State |
Round 13
| Overall Selection | Team | Player | Position | College |
| 418 | L.A. Angels | David Clark | RHP | Southern Miss |
Round 15
| Overall Selection | Team | Player | Position | College |
| 464 | San Francisco | Bruce Edwards | OF | Auburn |
| 479 | Chicago White Sox | Gregory Paiml | SS | Alabama |
Round 16
| Overall Selection | Team | Player | Position | College |
| 485 | Tampa Bay | Joshua Johnson | RHP | Mississippi State |
Round 17
| Overall Selection | Team | Player | Position | College |
| 530 | Texas | Mitch Moreland | 1B | Mississippi State |
Round 18
| Overall Selection | Team | Player | Position | College |
| 547 | Chicago Cubs | Jeffrey Rea | 2B | Mississippi State |
Round 19
| Overall Selection | Team | Player | Position | College |
| 588 | Atlanta | Brett Butts | RHP | Auburn |
Round 23
| Overall Selection | Team | Player | Position | College |
| 718 | L.A. Angels | Michael Bianucci | LF | Auburn |
Round 25
| Overall Selection | Team | Player | Position | College |
| 780 | Oakland | Jareck West | CF/LF | Delta State |
Round 27
| Overall Selection | Team | Player | Position | College |
| 822 | Colorado | James Sims | CF | Jackson State |
Round 28
| Overall Selection | Team | Player | Position | College |
| 852 | Colorado | John Rodriguez | LHP | Ole Miss |
Round 32
| Overall Selection | Team | Player | Position | College |
| 967 | Pittsburgh | Daniel Forrer | LHP | Auburn |
Round 34
| Overall Selection | Team | Player | Position | College |
| 1049 | N.Y. Mets | Terry Johnson | SS | William Carey |
Round 35
| Overall Selection | Team | Player | Position | College |
| 1059 | Arizona | Joshua Blake | LHP | Auburn |
Round 36
| Overall Selection | Team | Player | Position | College |
| 1088 | Arizona | Tyler Conn | LHP | Southern Miss |
Round 45
| Overall Selection | Team | Player | Position | College |
| 1336 | Cincinnati | Jordan Brown | RHP | Meridian Comm. College |
Round 48
| Overall Selection | Team | Player | Position | College |
| 1411 | N.Y. Yankees | Joseph Bittle | RHP | Ole Miss |
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